Transcript: IL6R-AS1:3

Basic information

LNCipedia transcript ID: IL6R-AS1:3 
HGNC Gene Symbol: IL6R-AS1    
HGNC Full Gene Name: IL6R antisense RNA 1
Ensembl Gene ID: ENSG00000228013
Ensembl Transcript ID: ENST00000424435
Location (hg38): chr1:154402328-154406564
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1756 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424435; ENST00000424435.1; RP11-350G8.5-001; OTTHUMT00000087908.1; NONHSAT006615
Alternative gene names: ENSG00000228013; RP11-350G8.5; ENSG00000228013.1; OTTHUMG00000036070.1; AL162591.1; IL6R-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.7562 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IL6R-AS1:3 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHE-2:1
3.1 lnc-SHE-2:1
4.0 lnc-SHE-2:1
4.1 lnc-SHE-2:1
5.0 lnc-SHE-2:1
5.1 IL6R-AS1:2
5.2 IL6R-AS1:3