Transcript: ILF3-DT:16

Basic information

LNCipedia transcript ID: ILF3-DT:16 
LNCipedia gene ID: ILF3-DT
Location (hg38): chr19:10651819-10653877
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1849 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00027673; NONHSAT061079
Alternative gene names: XLOC_013222; linc-AP1M2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.9796 non-coding 
CPAT coding probability 11.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ILF3-DT:16 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP1M2-1:2
3.1 lnc-AP1M2-1:2
4.0 ILF3-AS1:4
4.1 ILF3-AS1:4
5.0 ILF3-AS1:4
5.1 ILF3-DT:5
5.2 ILF3-DT:16