Transcript: INKA2-AS1:21

Basic information

LNCipedia transcript ID: INKA2-AS1:21 
HGNC Gene Symbol: INKA2-AS1    
HGNC Full Gene Name: INKA2 antisense RNA 1
Ensembl Gene ID: ENSG00000227811
Ensembl Transcript ID: ENST00000430373
RefSeq ID: NR_038951
Location (hg38): chr1:111739841-111747798
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2131 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000430373; ENST00000430373.1; RP4-773A18.4-001; OTTHUMT00000033061.1; NONHSAT005201; NR_038951; NR_038951.1
Alternative gene names: ENSG00000227811; RP4-773A18.4; ENSG00000227811.2; OTTHUMG00000011954.2; FAM212B-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.797 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
INKA2-AS1:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DDX20-1:1
3.1 lnc-DDX20-1:1
4.0 FAM212B-AS1:1
4.1 FAM212B-AS1:1
5.0 FAM212B-AS1:1
5.1 INKA2-AS1:9
5.2 INKA2-AS1:21