Transcript: IPO9-AS1:1

Basic information

LNCipedia transcript ID: IPO9-AS1:1 
HGNC Gene Symbol: IPO9-AS1    
HGNC Full Gene Name: IPO9 antisense RNA 1
Ensembl Gene ID: ENSG00000231871
Ensembl Transcript ID: ENST00000413035
Location (hg38): chr1:201688259-201829559
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 839 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413035.1; IPO9-AS1-001; OTTHUMT00000087101.1; NONHSAT008770; ENST00000413035.5
Alternative gene names: ENSG00000231871.1; IPO9-AS1; OTTHUMG00000035809.1; ENSG00000231871.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.5023 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IPO9-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LMOD1-3:1
4.0 IPO9-AS1:1
4.1 IPO9-AS1:1
5.0 IPO9-AS1:1
5.1 IPO9-AS1:1
5.2 IPO9-AS1:1