Transcript: IQCJ-SCHIP1-AS1:2

Basic information

LNCipedia transcript ID: IQCJ-SCHIP1-AS1:2 
HGNC Gene Symbol: IQCJ-SCHIP1-AS1    
HGNC Full Gene Name: IQCJ-SCHIP1 readthrough antisense RNA 1
Ensembl Gene ID: ENSG00000241211
Ensembl Transcript ID: ENST00000488247
Location (hg38): chr3:159768317-159768612
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 222 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000488247.1; IQCJ-SCHIP1-AS1-002; OTTHUMT00000352556.1; NONHSAT147262
Alternative gene names: ENSG00000241211.1; IQCJ-SCHIP1-AS1; OTTHUMG00000158933.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.9432 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IQCJ-SCHIP1-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-432B6.3.1-2:1
4.0 IQCJ-SCHIP1-AS1:2
4.1 IQCJ-SCHIP1-AS1:2
5.0 IQCJ-SCHIP1-AS1:2
5.1 IQCJ-SCHIP1-AS1:2
5.2 IQCJ-SCHIP1-AS1:2