Transcript: ITFG2-AS1:34

Basic information

LNCipedia transcript ID: ITFG2-AS1:34 
LNCipedia gene ID: ITFG2-AS1
Ensembl Gene ID: ENSG00000258092
Ensembl Transcript ID: ENST00000547042
Location (hg38): chr12:2797136-2803938
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 287 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547042.1; RP4-816N1.7-001; OTTHUMT00000403844.1; NONHSAT025480
Alternative gene names: ENSG00000258092.1; RP4-816N1.7; OTTHUMG00000169390.1; AC005841.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -409.9102 non-coding 
CPAT coding probability 2.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITFG2-AS1:34 yes no no no

Available literature

  1. Schein (2016), Identification of antisense long noncoding RNAs that function as SINEUPs in human cells., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRIP2-2:1
4.0 lnc-NRIP2-2:1
4.1 lnc-NRIP2-1:14
5.0 lnc-NRIP2-1:14
5.1 ITFG2-AS1:15
5.2 ITFG2-AS1:34