Transcript: ITFG2-AS1:35

Basic information

LNCipedia transcript ID: ITFG2-AS1:35 
LNCipedia gene ID: ITFG2-AS1
Ensembl Gene ID: ENSG00000256150
Ensembl Transcript ID: ENST00000636122
Location (hg38): chr12:2695765-2795020
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 962 bp
Exons: 6
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000636122.1
Alternative gene names: ENSG00000256150.2; RP11-885B4.1; ITFG2-AS1; AC092471.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.1558 non-coding 
CPAT coding probability 8.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITFG2-AS1:35 no no no no

Available literature

  1. Schein (2016), Identification of antisense long noncoding RNAs that function as SINEUPs in human cells., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-NRIP2-1:15
5.0 lnc-NRIP2-1:15
5.1 ITFG2-AS1:16
5.2 ITFG2-AS1:35