Transcript: ITFG2-AS1:38

Basic information

LNCipedia transcript ID: ITFG2-AS1:38 
LNCipedia gene ID: ITFG2-AS1
Location (hg38): chr12:2771859-2793894
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1074 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT025472
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.6563 non-coding 
CPAT coding probability 8.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITFG2-AS1:38 no no no no

Available literature

  1. Schein (2016), Identification of antisense long noncoding RNAs that function as SINEUPs in human cells., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRIP2-4:4
4.0 lnc-NRIP2-4:4
4.1 lnc-NRIP2-1:18
5.0 lnc-NRIP2-1:18
5.1 ITFG2-AS1:19
5.2 ITFG2-AS1:38