Transcript: ITFG2-AS1:39

Basic information

LNCipedia transcript ID: ITFG2-AS1:39 
LNCipedia gene ID: ITFG2-AS1
Location (hg38): chr12:2742626-2771908
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 220 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000540093; ENST00000540093.1; RP11-885B4.1-001; OTTHUMT00000398349.1; NONHSAT025469
Alternative gene names: ENSG00000256150; RP11-885B4.1; ENSG00000256150.1; OTTHUMG00000168140.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.6094 non-coding 
CPAT coding probability 2.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITFG2-AS1:39 no no no no

Available literature

  1. Schein (2016), Identification of antisense long noncoding RNAs that function as SINEUPs in human cells., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRIP2-2:1
3.1 lnc-NRIP2-4:1
4.0 lnc-NRIP2-4:1
4.1 lnc-NRIP2-1:19
5.0 lnc-NRIP2-1:19
5.1 ITFG2-AS1:20
5.2 ITFG2-AS1:39