Transcript: ITGA9-AS1:49

Basic information

LNCipedia transcript ID: ITGA9-AS1:49 
LNCipedia gene ID: ITGA9-AS1
Location (hg38): chr3:37780857-37836763
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3263 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003che_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.7915 non-coding 
CPAT coding probability 8.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGA9-AS1:49 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLCD1-3:1
4.0 lnc-PLCD1-3:1
4.1 ITGA9-AS1:49
5.0 ITGA9-AS1:49
5.1 ITGA9-AS1:49
5.2 ITGA9-AS1:49