Transcript: ITGB2-AS1:11

Basic information

LNCipedia transcript ID: ITGB2-AS1:11 
HGNC Gene Symbol: ITGB2-AS1    
HGNC Full Gene Name: ITGB2 antisense RNA 1
Ensembl Gene ID: ENSG00000227039
Ensembl Transcript ID: ENST00000608043
Location (hg38): chr21:44921076-44927944
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 551 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608043.1; ENST00000608043.5
Alternative gene names: ENSG00000227039.2; ITGB2-AS1; ENSG00000227039.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.228 non-coding 
CPAT coding probability 7.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ITGB2-AS1:11 yes no no no

Available literature

  1. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM207A-1:12
4.0 ITGB2-AS1:11
4.1 ITGB2-AS1:11
5.0 ITGB2-AS1:11
5.1 ITGB2-AS1:11
5.2 ITGB2-AS1:11