Transcript: ITGB2-AS1:4

Basic information

LNCipedia transcript ID: ITGB2-AS1:4 
LNCipedia gene ID: ITGB2-AS1
RefSeq ID: NR_038313
Location (hg38): chr21:44921035-44929680
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2371 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT082898; NR_038313; NR_038313.1
Alternative gene names: ; ITGB2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.228 non-coding 
CPAT coding probability 70.07% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ITGB2-AS1:4 yes no no no

Available literature

  1. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM207A-1:6
4.0 ITGB2-AS1:4
4.1 ITGB2-AS1:4
5.0 ITGB2-AS1:4
5.1 ITGB2-AS1:4
5.2 ITGB2-AS1:4