Transcript: JADRR:3

Basic information

LNCipedia transcript ID: JADRR:3 
HGNC Gene Symbol: JADRR    
HGNC Full Gene Name: JADE1 adjacent regulatory RNA
Ensembl Gene ID: ENSG00000280711
Ensembl Transcript ID: ENST00000626286
Location (hg38): chr4:128768228-128769948
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1721 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626286.1
Alternative gene names: ENSG00000280711.1; JADRR; AC108024.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.8671 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
JADRR:3 no no no no

Available literature

  1. Wan (2013), A novel non-coding RNA lncRNA-JADE connects DNA damage signalling to histone H4 acetylation., EMBO J.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PHF17-7:1
4.1 lnc-PHF17-7:1
5.0 lnc-PHF17-7:1
5.1 JADRR:2
5.2 JADRR:3