Transcript: JRKL-AS1:5

Basic information

LNCipedia transcript ID: JRKL-AS1:5 
LNCipedia gene ID: JRKL-AS1
Location (hg38): chr11:96443200-96447466
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 294 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT023806; FPKM1_group_5195_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.9254 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
JRKL-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC82-1:5
4.0 JRKL-AS1:5
4.1 JRKL-AS1:5
5.0 JRKL-AS1:5
5.1 JRKL-AS1:5
5.2 JRKL-AS1:5