Transcript: KAZN-AS1:11

Basic information

LNCipedia transcript ID: KAZN-AS1:11 
LNCipedia gene ID: KAZN-AS1
Location (hg38): chr1:14348955-14351023
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 579 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000472; ENST00000447908; ENST00000447908.1; RP4-704D23.1-001; OTTHUMT00000005696.1; NONHSAT000999
Alternative gene names: XLOC_000710; linc-LRRC38-2; ENSG00000234593; RP4-704D23.1; ENSG00000234593.1; OTTHUMG00000002044.1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.1813 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KAZN-AS1:11 yes no no no

Available literature

  1. Liu (2016), Comprehensive transcriptome analysis identifies novel molecular subtypes and subtype-specific RNAs of triple-negative breast cancer., Breast Cancer Res.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf195-4:1
3.1 lnc-C1orf195-4:1
4.0 lnc-C1orf195-3:5
4.1 lnc-C1orf195-3:5
5.0 lnc-C1orf195-3:5
5.1 KAZN-AS1:6
5.2 KAZN-AS1:11