Transcript: KCND3-IT1:1

Basic information

LNCipedia transcript ID: KCND3-IT1:1 
HGNC Gene Symbol: KCND3-IT1    
HGNC Full Gene Name: KCND3 intronic transcript 1
Ensembl Gene ID: ENSG00000232558
Ensembl Transcript ID: ENST00000439736
RefSeq ID: NR_046783
Location (hg38): chr1:111853762-111856905
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 376 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000439736.1; KCND3-IT1-001; OTTHUMT00000033146.1; NONHSAT005208; NR_046783; NR_046783.1
Alternative gene names: ENSG00000232558.1; KCND3-IT1; OTTHUMG00000011990.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.3776 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KCND3-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM212B-1:1
4.0 KCND3-IT1:1
4.1 KCND3-IT1:1
5.0 KCND3-IT1:1
5.1 KCND3-IT1:1
5.2 KCND3-IT1:1