Transcript: KCNQ1-AS1:2

Basic information

LNCipedia transcript ID: KCNQ1-AS1:2 
HGNC Gene Symbol: KCNQ1-AS1    
HGNC Full Gene Name: KCNQ1 antisense RNA 1
Ensembl Gene ID: ENSG00000229414
Ensembl Transcript ID: ENST00000440887
Location (hg38): chr11:2840135-2861568
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1084 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440887; ENST00000440887.2; KCNQ1-AS1-002; OTTHUMT00000383080.1; NONHSAT017529
Alternative gene names: ENSG00000229414; AC013791.10; ENSG00000229414.2; KCNQ1-AS1; OTTHUMG00000011704.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.2258 non-coding 
CPAT coding probability 4.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KCNQ1-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDKN1C-2:1
3.1 lnc-CDKN1C-2:1
4.0 KCNQ1-AS1:2
4.1 KCNQ1-AS1:2
5.0 KCNQ1-AS1:2
5.1 KCNQ1-AS1:2
5.2 KCNQ1-AS1:2