Transcript: KCNQ1DN:2

Basic information

LNCipedia transcript ID: KCNQ1DN:2 
HGNC Gene Symbol: KCNQ1DN    
HGNC Full Gene Name: KCNQ1 downstream neighbor
Ensembl Gene ID: ENSG00000237941
Ensembl Transcript ID: ENST00000441418
RefSeq ID: NR_024627
Location (hg38): chr11:2870033-2872105
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1093 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000441418.2; KCNQ1DN-001; OTTHUMT00000027530.3; NR_024627.1
Alternative gene names: ENSG00000237941.2; KCNQ1DN; OTTHUMG00000009942.3; BWRT; HSA404617


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.5059 non-coding 
CPAT coding probability 6.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KCNQ1DN:2 no no no no

Available literature

  1. Koch (2011), Epigenetic-aging-signature to determine age in different tissues., Aging (Albany NY)
  2. Engemann (2000), Sequence and functional comparison in the Beckwith-Wiedemann region: implications for a novel imprinting centre and extended imprinting., Hum. Mol. Genet.
  3. Xin (2000), A novel imprinted gene, KCNQ1DN, within the WT2 critical region of human chromosome 11p15.5 and its reduced expression in Wilms' tumors., J. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNQ1-1:1
4.0 KCNQ1DN:2
4.1 KCNQ1DN:2
5.0 KCNQ1DN:2
5.1 KCNQ1DN:2
5.2 KCNQ1DN:2