Transcript: KCNQ1DN:3

Basic information

LNCipedia transcript ID: KCNQ1DN:3 
LNCipedia gene ID: KCNQ1DN
Location (hg38): chr11:2870033-2872106
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1094 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT017531; NR_024627
Alternative gene names: BWRT; HSA404617


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.5059 non-coding 
CPAT coding probability 6.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KCNQ1DN:3 no no no no

Available literature

  1. Koch (2011), Epigenetic-aging-signature to determine age in different tissues., Aging (Albany NY)
  2. Engemann (2000), Sequence and functional comparison in the Beckwith-Wiedemann region: implications for a novel imprinting centre and extended imprinting., Hum. Mol. Genet.
  3. Xin (2000), A novel imprinted gene, KCNQ1DN, within the WT2 critical region of human chromosome 11p15.5 and its reduced expression in Wilms' tumors., J. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNQ1-1:3
4.0 KCNQ1DN:3
4.1 KCNQ1DN:3
5.0 KCNQ1DN:3
5.1 KCNQ1DN:3
5.2 KCNQ1DN:3