Transcript: KDM5C-IT1:1

Basic information

LNCipedia transcript ID: KDM5C-IT1:1 
HGNC Gene Symbol: KDM5C-IT1    
HGNC Full Gene Name: KDM5C intronic transcript 1
Ensembl Gene ID: ENSG00000235262
Ensembl Transcript ID: ENST00000412242
Location (hg38): chrX:53212408-53214679
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 755 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412242.1; KDM5C-IT1-001; OTTHUMT00000056729.1; NONHSAT137170
Alternative gene names: ENSG00000235262.1; KDM5C-IT1; OTTHUMG00000021604.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.4111 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KDM5C-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IQSEC2-1:1
4.0 KDM5C-IT1:1
4.1 KDM5C-IT1:1
5.0 KDM5C-IT1:1
5.1 KDM5C-IT1:1
5.2 KDM5C-IT1:1