Transcript: KDM7A-DT:10

Basic information

LNCipedia transcript ID: KDM7A-DT:10 
LNCipedia gene ID: KDM7A-DT
RefSeq ID: NR_024451
Location (hg38): chr7:140177261-140179640
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2380 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000566699.1; RP4-659J6.2-001; OTTHUMT00000422281.1; NR_024451; NR_024451.1
Alternative gene names: ENSG00000260231.1; RP4-659J6.2; OTTHUMG00000173155.1; JHDM1D-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.3679 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KDM7A-DT:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TBXAS1-2:1
4.0 JHDM1D-AS1:2
4.1 JHDM1D-AS1:2
5.0 JHDM1D-AS1:2
5.1 KDM7A-DT:6
5.2 KDM7A-DT:10