Transcript: KIAA0087:5

Basic information

LNCipedia transcript ID: KIAA0087:5 
HGNC Gene Symbol: KIAA0087    
HGNC Full Gene Name: KIAA0087 lncRNA
Ensembl Gene ID: ENSG00000122548
Ensembl Transcript ID: ENST00000242109
Location (hg38): chr7:26533121-26538788
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4283 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000242109.5
Alternative gene names: ENSG00000122548.5; KIAA0087


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.4502 non-coding 
CPAT coding probability 13.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KIAA0087:5 no no no no

Available literature

  1. Xu (2016), Distinct expression profile of lncRNA in endometrial carcinoma., Oncol. Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-KIAA0087-3:2
4.1 lnc-KIAA0087-3:2
5.0 lnc-KIAA0087-3:2
5.1 KIAA0087:3
5.2 KIAA0087:5