Transcript: KIRREL1-IT1:3

Basic information

LNCipedia transcript ID: KIRREL1-IT1:3 
HGNC Gene Symbol: KIRREL1-IT1    
HGNC Full Gene Name: KIRREL1 intronic transcript 1
Ensembl Gene ID: ENSG00000226520
Ensembl Transcript ID: ENST00000419415
Location (hg38): chr1:158025550-158031166
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 587 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419415.1; KIRREL-IT1-001; OTTHUMT00000086427.1; NONHSAT006960
Alternative gene names: ENSG00000226520.1; KIRREL-IT1; OTTHUMG00000035615.1; ; KIRREL1-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.7061 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KIRREL1-IT1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD1D-3:1
4.0 KIRREL-IT1:1
4.1 KIRREL-IT1:1
5.0 KIRREL-IT1:1
5.1 KIRREL1-IT1:2
5.2 KIRREL1-IT1:3