Transcript: KRTAP5-AS1:6

Basic information

LNCipedia transcript ID: KRTAP5-AS1:6 
HGNC Gene Symbol: KRTAP5-AS1    
HGNC Full Gene Name: KRTAP5-1/KRTAP5-2 antisense RNA 1
Ensembl Gene ID: ENSG00000233930
Ensembl Transcript ID: ENST00000534077
Location (hg38): chr11:1573649-1597441
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000534077; ENST00000534077.1; RP13-25N22.1-003; OTTHUMT00000384774.1; NONHSAT140007
Alternative gene names: ENSG00000233930; RP13-25N22.1; ENSG00000233930.3; OTTHUMG00000165546.3; KRTAP5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.9902 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KRTAP5-AS1:6 no no no no

Available literature

  1. Song (2017), Non-coding RNAs participate in the regulatory network of CLDN4 via ceRNA mediated miRNA evasion., Nat Commun
  2. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  3. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KRTAP5-5-1:4
3.1 lnc-KRTAP5-5-1:4
4.0 KRTAP5-AS1:6
4.1 KRTAP5-AS1:6
5.0 KRTAP5-AS1:6
5.1 KRTAP5-AS1:6
5.2 KRTAP5-AS1:6