Transcript: KRTAP5-AS1:7

Basic information

LNCipedia transcript ID: KRTAP5-AS1:7 
LNCipedia gene ID: KRTAP5-AS1
Location (hg38): chr11:1572488-1597355
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1484 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233930.3|MICT00000052778.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -135.9301 non-coding 
CPAT coding probability 7.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
KRTAP5-AS1:7 no no no no

Available literature

  1. Song (2017), Non-coding RNAs participate in the regulatory network of CLDN4 via ceRNA mediated miRNA evasion., Nat Commun
  2. Miano (2016), Luminal long non-coding RNAs regulated by estrogen receptor alpha in a ligand-independent manner show functional roles in breast cancer., Oncotarget
  3. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 KRTAP5-AS1:7
5.0 KRTAP5-AS1:7
5.1 KRTAP5-AS1:7
5.2 KRTAP5-AS1:7