Transcript: LAMC1-AS1:3

Basic information

LNCipedia transcript ID: LAMC1-AS1:3 
HGNC Gene Symbol: LAMC1-AS1    
HGNC Full Gene Name: LAMC1 antisense RNA 1
Ensembl Gene ID: ENSG00000224468
Ensembl Transcript ID: ENST00000457852
Location (hg38): chr1:183138402-183141282
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 479 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457852.3
Alternative gene names: ENSG00000224468.3; RP11-181K3.4; AL354953.1; LAMC1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.4115 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LAMC1-AS1:3 no no no no

Available literature

  1. Gong (2016), A functional polymorphism in lnc-LAMC2-1:1 confers risk of colorectal cancer by affecting miRNA binding., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NMNAT2-4:1
4.0 lnc-NMNAT2-4:1
4.1 lnc-NMNAT2-4:1
5.0 lnc-NMNAT2-4:1
5.1 LAMC1-AS1:2
5.2 LAMC1-AS1:3