Transcript: LBX1-AS1:11

Basic information

LNCipedia transcript ID: LBX1-AS1:11 
HGNC Gene Symbol: LBX1-AS1    
HGNC Full Gene Name: LBX1 antisense RNA 1
Ensembl Gene ID: ENSG00000227128
Ensembl Transcript ID: ENST00000434878
Location (hg38): chr10:101237938-101270148
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 418 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434878; ENST00000434878.1; RP11-107I14.1-002; OTTHUMT00000049930.1; NONHSAT016040
Alternative gene names: ENSG00000227128; RP11-107I14.1; ENSG00000227128.2; OTTHUMG00000018928.1; ENSG00000227128.3; LBX1-AS1; ENSG00000227128.4; FLJ41350


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -276.7591 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LBX1-AS1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTRC-3:5
3.1 lnc-TLX1-2:5
4.0 LBX1-AS1:11
4.1 LBX1-AS1:11
5.0 LBX1-AS1:11
5.1 LBX1-AS1:11
5.2 LBX1-AS1:11