Transcript: LBX1-AS1:12

Basic information

LNCipedia transcript ID: LBX1-AS1:12 
HGNC Gene Symbol: LBX1-AS1    
HGNC Full Gene Name: LBX1 antisense RNA 1
Ensembl Gene ID: ENSG00000227128
Ensembl Transcript ID: ENST00000456391
Location (hg38): chr10:101238003-101238859
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 421 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456391; ENST00000456391.1; RP11-107I14.1-001; OTTHUMT00000049929.1; NONHSAT016041
Alternative gene names: ENSG00000227128; RP11-107I14.1; ENSG00000227128.2; OTTHUMG00000018928.1; ENSG00000227128.3; LBX1-AS1; ENSG00000227128.4; FLJ41350


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.3435 non-coding 
CPAT coding probability 6.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LBX1-AS1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTRC-3:6
3.1 lnc-TLX1-2:6
4.0 LBX1-AS1:12
4.1 LBX1-AS1:12
5.0 LBX1-AS1:12
5.1 LBX1-AS1:12
5.2 LBX1-AS1:12