Transcript: LBX1-AS1:3

Basic information

LNCipedia transcript ID: LBX1-AS1:3 
LNCipedia gene ID: LBX1-AS1
Location (hg38): chr10:101229611-101232434
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 385 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000546988; ENST00000546988.1; RP11-324L3.3-002; OTTHUMT00000409403.1
Alternative gene names: ENSG00000257638; RP11-324L3.3; ENSG00000257638.1; OTTHUMG00000170500.1; ENSG00000227128.3; LBX1-AS1; FLJ41350


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 11.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LBX1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTRC-3:2
3.1 lnc-TLX1-2:2
4.0 LBX1-AS1:3
4.1 LBX1-AS1:3
5.0 LBX1-AS1:3
5.1 LBX1-AS1:3
5.2 LBX1-AS1:3