Transcript: LCMT1-AS2:3

Basic information

LNCipedia transcript ID: LCMT1-AS2:3 
HGNC Gene Symbol: LCMT1-AS2    
HGNC Full Gene Name: LCMT1 antisense RNA 2
Ensembl Gene ID: ENSG00000260034
Ensembl Transcript ID: ENST00000565214
Location (hg38): chr16:25140583-25146248
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5666 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565214.1; RP11-266L9.2-002; OTTHUMT00000435749.1; NONHSAT141391
Alternative gene names: ENSG00000260034.1; RP11-266L9.2; OTTHUMG00000177183.1; LCMT1-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.6593 non-coding 
CPAT coding probability 86.78% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LCMT1-AS2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZKSCAN2-1:2
4.0 LCMT1-AS2:3
4.1 LCMT1-AS2:3
5.0 LCMT1-AS2:3
5.1 LCMT1-AS2:3
5.2 LCMT1-AS2:3