Transcript: LEF1-AS1:3

Basic information

LNCipedia transcript ID: LEF1-AS1:3 
HGNC Gene Symbol: LEF1-AS1    
HGNC Full Gene Name: LEF1 antisense RNA 1
Ensembl Gene ID: ENSG00000232021
Ensembl Transcript ID: ENST00000508266
Location (hg38): chr4:108171771-108173768
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508266.1; LEF1-AS1-004; OTTHUMT00000363476.1; NONHSAT097744
Alternative gene names: ENSG00000232021.2; LEF1-AS1; OTTHUMG00000161028.1; ENSG00000232021.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -132.2075 non-coding 
CPAT coding probability 9.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LEF1-AS1:3 no no no no

Available literature

  1. Wang (2017), <i>LEF1-AS1</i>, a long-noncoding RNA, promotes malignancy in glioblastoma., Onco Targets Ther
  2. Wang (2016), Identification of long noncoding RNAs as potential novel diagnosis and prognosis biomarkers in colorectal cancer., J. Cancer Res. Clin. Oncol.
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HADH-1:2
4.0 LEF1-AS1:3
4.1 LEF1-AS1:3
5.0 LEF1-AS1:3
5.1 LEF1-AS1:3
5.2 LEF1-AS1:3