Transcript: LEF1-AS1:5

Basic information

LNCipedia transcript ID: LEF1-AS1:5 
LNCipedia gene ID: LEF1-AS1
RefSeq ID: NR_029373
Location (hg38): chr4:108172120-108176430
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1679 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT097745; NR_029373; NR_029373.1
Alternative gene names: ; LEF1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.2034 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LEF1-AS1:5 no no no no

Available literature

  1. Wang (2017), <i>LEF1-AS1</i>, a long-noncoding RNA, promotes malignancy in glioblastoma., Onco Targets Ther
  2. Wang (2016), Identification of long noncoding RNAs as potential novel diagnosis and prognosis biomarkers in colorectal cancer., J. Cancer Res. Clin. Oncol.
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HADH-1:9
4.0 LEF1-AS1:5
4.1 LEF1-AS1:5
5.0 LEF1-AS1:5
5.1 LEF1-AS1:5
5.2 LEF1-AS1:5