Transcript: LGALSL-DT:13

Basic information

LNCipedia transcript ID: LGALSL-DT:13 
HGNC Gene Symbol: LGALSL-DT    
HGNC Full Gene Name: LGALSL divergent transcript
Ensembl Gene ID: ENSG00000223935
Ensembl Transcript ID: ENST00000441630
Location (hg38): chr2:64395220-64453798
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 723 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441630.1; AC008074.3-001; OTTHUMT00000327285.1; NONHSAT071113
Alternative gene names: ENSG00000223935.1; AC008074.3; OTTHUMG00000152670.1; AC008074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.2297 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LGALSL-DT:13 no no no no

Available literature

  1. Fei (2018), Identification of aberrantly expressed long non-coding RNAs in postmenopausal osteoporosis., Int. J. Mol. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERTAD2-4:1
4.0 lnc-SERTAD2-4:1
4.1 lnc-SERTAD2-4:1
5.0 lnc-SERTAD2-4:1
5.1 LGALSL-DT:7
5.2 LGALSL-DT:13