Transcript: LHFPL3-AS2:3

Basic information

LNCipedia transcript ID: LHFPL3-AS2:3 
LNCipedia gene ID: LHFPL3-AS2
Location (hg38): chr7:104917560-104926630
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 640 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000453666; ENST00000453666.1; RP11-325F22.5-001; OTTHUMT00000348304.1
Alternative gene names: ENSG00000225329; RP11-325F22.5; ENSG00000225329.1; OTTHUMG00000157279.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.7112 non-coding 
CPAT coding probability 2.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHFPL3-AS2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SRPK2-2:1
3.1 lnc-SRPK2-3:1
4.0 LHFPL3-AS2:3
4.1 LHFPL3-AS2:3
5.0 LHFPL3-AS2:3
5.1 LHFPL3-AS2:3
5.2 LHFPL3-AS2:3