Transcript: LHFPL3-AS2:4

Basic information

LNCipedia transcript ID: LHFPL3-AS2:4 
LNCipedia gene ID: LHFPL3-AS2
Ensembl Gene ID: ENSG00000225329
Ensembl Transcript ID: ENST00000453666
Location (hg38): chr7:104911916-104926630
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 923 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453666.2
Alternative gene names: ENSG00000225329.3; LHFPL3-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.9581 non-coding 
CPAT coding probability 4.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHFPL3-AS2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LHFPL3-AS2:4
4.1 LHFPL3-AS2:4
5.0 LHFPL3-AS2:4
5.1 LHFPL3-AS2:4
5.2 LHFPL3-AS2:4