Transcript: LHX1-DT:14

Basic information

LNCipedia transcript ID: LHX1-DT:14 
LNCipedia gene ID: LHX1-DT
Location (hg38): chr17:36932656-36936723
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 901 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026057
Alternative gene names: XLOC_012452; linc-MYO19-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.5018 non-coding 
CPAT coding probability 2.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX1-DT:14 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACACA-1:1
3.1 lnc-ACACA-1:1
4.0 lnc-ACACA-5:1
4.1 lnc-ACACA-5:1
5.0 lnc-ACACA-5:1
5.1 LHX1-DT:2
5.2 LHX1-DT:14