Transcript: LHX1-DT:15

Basic information

LNCipedia transcript ID: LHX1-DT:15 
HGNC Gene Symbol: LHX1-DT    
HGNC Full Gene Name: LHX1 divergent transcript
Ensembl Gene ID: ENSG00000277268
Ensembl Transcript ID: ENST00000616341
RefSeq ID: NR_135671
Location (hg38): chr17:36861674-36936661
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 490 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000528383; ENST00000528383.1; RP11-445F12.1-004; OTTHUMT00000387605.1; NONHSAT053241; ENST00000616341.1; NR_135671.1
Alternative gene names: ENSG00000255509; RP11-445F12.1; ENSG00000255509.1; OTTHUMG00000166047.1; ENSG00000255509.2; ENSG00000277268.1; AC243773.2; LHX1-DT; LOC102723471


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -652.0242 non-coding 
CPAT coding probability 22.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX1-DT:15 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACACA-1:2
3.1 lnc-ACACA-1:2
4.0 lnc-ACACA-5:2
4.1 lnc-ACACA-5:2
5.0 lnc-ACACA-5:2
5.1 LHX1-DT:3
5.2 LHX1-DT:15