Transcript: LHX1-DT:17

Basic information

LNCipedia transcript ID: LHX1-DT:17 
HGNC Gene Symbol: LHX1-DT    
HGNC Full Gene Name: LHX1 divergent transcript
Ensembl Gene ID: ENSG00000277268
Ensembl Transcript ID: ENST00000614277
Location (hg38): chr17:36906995-36936658
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 640 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053243; ENST00000532387.2; ENST00000614277.1
Alternative gene names: ENSG00000255509.2; RP11-445F12.1; ENSG00000277268.1; AC243773.2; LHX1-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -498.7608 non-coding 
CPAT coding probability 5.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX1-DT:17 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACACA-1:6
4.0 lnc-ACACA-5:4
4.1 lnc-ACACA-5:4
5.0 lnc-ACACA-5:4
5.1 LHX1-DT:8
5.2 LHX1-DT:17