Transcript: LHX1-DT:20

Basic information

LNCipedia transcript ID: LHX1-DT:20 
HGNC Gene Symbol: LHX1-DT    
HGNC Full Gene Name: LHX1 divergent transcript
Ensembl Gene ID: ENSG00000277268
Ensembl Transcript ID: ENST00000621428
Location (hg38): chr17:36932109-36936622
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1462 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525111; TCONS_00025137; ENST00000525111.1; RP11-445F12.1-001; OTTHUMT00000387608.1; NONHSAT053247; ENST00000621428.1
Alternative gene names: ENSG00000255509; XLOC_012452; linc-MYO19-1; RP11-445F12.1; ENSG00000255509.1; OTTHUMG00000166047.1; ENSG00000255509.2; ENSG00000277268.1; AC243773.2; LHX1-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.6671 non-coding 
CPAT coding probability 15.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX1-DT:20 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACACA-1:5
3.1 lnc-ACACA-1:5
4.0 lnc-ACACA-5:7
4.1 lnc-ACACA-5:7
5.0 lnc-ACACA-5:7
5.1 LHX1-DT:11
5.2 LHX1-DT:20