Transcript: LHX1-DT:21

Basic information

LNCipedia transcript ID: LHX1-DT:21 
LNCipedia gene ID: LHX1-DT
Location (hg38): chr17:36931024-36936122
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2522 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT053245
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.1123 non-coding 
CPAT coding probability 14.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX1-DT:21 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACACA-1:8
4.0 lnc-ACACA-5:8
4.1 lnc-ACACA-5:8
5.0 lnc-ACACA-5:8
5.1 LHX1-DT:12
5.2 LHX1-DT:21