Transcript: LHX1-DT:4

Basic information

LNCipedia transcript ID: LHX1-DT:4 
LNCipedia gene ID: LHX1-DT
RefSeq ID: NR_135669
Location (hg38): chr17:36906995-36936661
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 942 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135669.1
Alternative gene names: LOC102723471


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -205.7456 non-coding 
CPAT coding probability 3.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX1-DT:4 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LHX1-DT:4
5.1 LHX1-DT:4
5.2 LHX1-DT:4