Transcript: LHX1-DT:5

Basic information

LNCipedia transcript ID: LHX1-DT:5 
LNCipedia gene ID: LHX1-DT
RefSeq ID: NR_135670
Location (hg38): chr17:36906995-36936661
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 643 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135670.1
Alternative gene names: LOC102723471


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -498.7608 non-coding 
CPAT coding probability 3.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX1-DT:5 no no no no

Available literature

  1. Blondeau (2015), Identification of novel long non-coding RNAs in clear cell renal cell carcinoma., Clin Epigenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LHX1-DT:5
5.1 LHX1-DT:5
5.2 LHX1-DT:5