Transcript: LHX4-AS1:8

Basic information

LNCipedia transcript ID: LHX4-AS1:8 
LNCipedia gene ID: LHX4-AS1
Location (hg38): chr1:180269653-180274681
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2667 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000415414.1; RP5-1180C10.2-001; OTTHUMT00000084992.1; NONHSAT008253
Alternative gene names: ENSG00000230124.2; RP5-1180C10.2; OTTHUMG00000035113.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 246.5335 coding 
CPAT coding probability 28.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LHX4-AS1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ACBD6-1:2
4.0 lnc-ACBD6-1:2
4.1 lnc-ACBD6-1:2
5.0 lnc-ACBD6-1:2
5.1 LHX4-AS1:4
5.2 LHX4-AS1:8