Transcript: LHX5-AS1:1

Basic information

LNCipedia transcript ID: LHX5-AS1:1 
LNCipedia gene ID: LHX5-AS1
RefSeq ID: NR_126425
Location (hg38): chr12:113472003-113480481
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 379 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000551357.1; RP11-82C23.2-001; OTTHUMT00000404789.1; NONHSAT030847; NR_126425; NR_126425.1
Alternative gene names: ENSG00000257935.1; RP11-82C23.2; OTTHUMG00000169553.1; locus4010; LHX5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX5-AS1:1 yes no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SDSL-2:1
4.0 LHX5-AS1:1
4.1 LHX5-AS1:1
5.0 LHX5-AS1:1
5.1 LHX5-AS1:1
5.2 LHX5-AS1:1