Transcript: LHX5-AS1:2

Basic information

LNCipedia transcript ID: LHX5-AS1:2 
HGNC Gene Symbol: LHX5-AS1    
HGNC Full Gene Name: LHX5 antisense RNA 1
Ensembl Gene ID: ENSG00000257935
Ensembl Transcript ID: ENST00000551357
Location (hg38): chr12:113472003-113480624
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 522 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551357.2
Alternative gene names: ENSG00000257935.2; RP11-82C23.2; LHX5-AS1; locus4010


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -198.9203 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX5-AS1:2 yes no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SDSL-2:2
4.0 LHX5-AS1:2
4.1 LHX5-AS1:2
5.0 LHX5-AS1:2
5.1 LHX5-AS1:2
5.2 LHX5-AS1:2