Transcript: LHX5-AS1:3

Basic information

LNCipedia transcript ID: LHX5-AS1:3 
LNCipedia gene ID: LHX5-AS1
Location (hg38): chr12:113472006-113476530
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3111 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257935.2|ENCT00000096261.1
Alternative gene names: locus4010


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.8386 non-coding 
CPAT coding probability 3.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LHX5-AS1:3 yes no no no

Available literature

  1. Sigova (2013), Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LHX5-AS1:3
5.0 LHX5-AS1:3
5.1 LHX5-AS1:3
5.2 LHX5-AS1:3