Transcript: LINC-ROR:1

Basic information

LNCipedia transcript ID: LINC-ROR:1 
LNCipedia gene ID: LINC-ROR
Location (hg38): chr18:57054582-57072119
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2580 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000553704; ENST00000553704.1; LINC-ROR-001; OTTHUMT00000414322.1
Alternative gene names: ENSG00000258609; CTD-2526M8.1; ENSG00000258609.1; LINC-ROR; OTTHUMG00000171587.1; lincRNA-RoR; lincRNA-ST8SIA3; ROR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.7861 non-coding 
CPAT coding probability 7.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC-ROR:1 no no no no

Available literature

  1. Gao (2016), ROR functions as a ceRNA to regulate Nanog expression by sponging miR-145 and predicts poor prognosis in pancreatic cancer., Oncotarget
  2. Mohankumar (2016), Extracellular vesicle long noncoding RNA as potential biomarkers of liver cancer., Brief Funct Genomics
  3. Rosa (2016), Long Noncoding RNA Regulation of Pluripotency., Stem Cells Int
  4. Bao (2015), The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters., Cell Res.
  5. Chen (2015), Macrophage infiltration promotes invasiveness of breast cancer cells via activating long non-coding RNA UCA1., Int J Clin Exp Pathol
  6. Ching (2015), Non-coding yet non-trivial: a review on the computational genomics of lincRNAs., BioData Min
  7. Eades (2015), lincRNA-RoR and miR-145 regulate invasion in triple-negative breast cancer via targeting ARF6., Mol. Cancer Res.
  8. Fan (2015), Long non-coding RNA ROR decoys gene-specific histone methylation to promote tumorigenesis., Genome Biol.
  9. Fan (2015), Erratum to: Long non-coding RNA ROR decoys gene-specific histone methylation to promote tumorigenesis., Genome Biol.
  10. Tan (2015), Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells., Genome Res.
  11. Wang (2015), The mitotic regulator Hec1 is a critical modulator of prostate cancer through the long non-coding RNA BX647187 in vitro., Biosci. Rep.
  12. Yu (2015), Tumor-derived exosomes in cancer progression and treatment failure., Oncotarget
  13. Batista (2014), m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells., Cell Stem Cell
  14. Das (2014), lnCeDB: database of human long noncoding RNA acting as competing endogenous RNA., PLoS ONE
  15. Hou (2014), LincRNA-ROR induces epithelial-to-mesenchymal transition and contributes to breast cancer tumorigenesis and metastasis., Cell Death Dis
  16. Huang (2014), Long non-coding RNA UCA1 promotes breast tumor growth by suppression of p27 (Kip1)., Cell Death Dis
  17. Li (2014), Noncoding RNAs: 'our turn' to join the p53 network., J Mol Cell Biol
  18. Takahashi (2014), Modulation of hypoxia-signaling pathways by extracellular linc-RoR., J. Cell. Sci.
  19. Takahashi (2014), Extracellular vesicle-mediated transfer of long non-coding RNA ROR modulates chemosensitivity in human hepatocellular cancer., FEBS Open Bio
  20. Zhang (2014), NRF2/long noncoding RNA ROR signaling regulates mammary stem cell expansion and protects against estrogen genotoxicity., J. Biol. Chem.
  21. Zhou (2014), Linc-RNA-RoR acts as a "sponge" against mediation of the differentiation of endometrial cancer stem cells by microRNA-145., Gynecol. Oncol.
  22. Cheng (2013), Repressing the repressor: a lincRNA as a MicroRNA sponge in embryonic stem cell self-renewal., Dev. Cell
  23. Guan (2013), Switching cell fate, ncRNAs coming to play., Cell Death Dis
  24. Wang (2013), Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal., Dev. Cell
  25. Zhang (2013), The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage., Cell Res.
  26. Kelley (2012), Transposable elements reveal a stem cell-specific class of long noncoding RNAs., Genome Biol.
  27. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TXNL1-1:1
3.1 lnc-TXNL1-2:1
4.0 LINC-ROR:1
4.1 LINC-ROR:1
5.0 LINC-ROR:1
5.1 LINC-ROR:1
5.2 LINC-ROR:1