Transcript: LINC00028:1

Basic information

LNCipedia transcript ID: LINC00028:1 
HGNC Gene Symbol: LINC00028    
HGNC Full Gene Name: long intergenic non-protein coding RNA 28
Ensembl Gene ID: ENSG00000233354
Ensembl Transcript ID: ENST00000435497
RefSeq ID: NR_024358
Location (hg38): chr20:31485778-31487574
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000435497; ENST00000435497.1; LINC00028-001; OTTHUMT00000078506.3; NONHSAT079298; NR_024358; NR_024358.1
Alternative gene names: ENSG00000233354; NCRNA00028; ENSG00000233354.1; LINC00028; OTTHUMG00000032166.3; dJ1093G12.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.1383 non-coding 
CPAT coding probability 12.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00028:1 no no no no

Available literature

  1. Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-REM1-1:1
3.1 lnc-REM1-1:1
4.0 LINC00028:1
4.1 LINC00028:1
5.0 LINC00028:1
5.1 LINC00028:1
5.2 LINC00028:1