Transcript: LINC00029:5

Basic information

LNCipedia transcript ID: LINC00029:5 
HGNC Gene Symbol: LINC00029    
HGNC Full Gene Name: long intergenic non-protein coding RNA 29
Ensembl Gene ID: ENSG00000125514
Ensembl Transcript ID: ENST00000370341
Location (hg38): chr20:63034217-63037028
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1631 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028085; ENST00000370341; ENST00000370341.3; LINC00029-001; OTTHUMT00000080099.2; NONHSAT147176
Alternative gene names: XLOC_013840; linc-BHLHE23-2; ENSG00000125514; NCRNA00029; ENSG00000125514.5; LINC00029; OTTHUMG00000032950.2; ENSG00000125514.9; bA305P22.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9827 non-coding 
CPAT coding probability 5.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00029:5 no no no no

Available literature

  1. Deloukas (2001), The DNA sequence and comparative analysis of human chromosome 20., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BHLHE23-1:5
3.1 lnc-BHLHE23-1:4
4.0 LINC00029:5
4.1 LINC00029:5
5.0 LINC00029:5
5.1 LINC00029:5
5.2 LINC00029:5