Transcript: LINC00029:6

Basic information

LNCipedia transcript ID: LINC00029:6 
LNCipedia gene ID: LINC00029
RefSeq ID: NR_028295
Location (hg38): chr20:63034217-63037028
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1749 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT080817; NR_028295; NR_028295.1
Alternative gene names: bA305P22.4; LINC00029


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9827 non-coding 
CPAT coding probability 17.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00029:6 no no no no

Available literature

  1. Deloukas (2001), The DNA sequence and comparative analysis of human chromosome 20., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BHLHE23-1:8
4.0 LINC00029:6
4.1 LINC00029:6
5.0 LINC00029:6
5.1 LINC00029:6
5.2 LINC00029:6